PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00079.1.g00330.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 404aa    MW: 43837.9 Da    PI: 4.7847
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00079.1.g00330.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19133182255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     +y+G+r+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a ++k++g
  Zpz_sc00079.1.g00330.1.sm.mkhc 133 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 182
                                     69*******.**********965...4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.55E-32133191No hitNo description
PROSITE profilePS5103223.933133190IPR001471AP2/ERF domain
SMARTSM003804.4E-37133196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-32133191IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-22133191IPR016177DNA-binding domain
PfamPF008476.8E-12134182IPR001471AP2/ERF domain
PRINTSPR003672.7E-11134145IPR001471AP2/ERF domain
PRINTSPR003672.7E-11156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MCGGAILSGF IRPSGGAAAK KKKQQSRRVT ADVLWPELGG KAGEEDFEAD FRQFERGLSE  60
DDVDAAGDDD EDDVVQLEVP PSPEWFVFGG AAKAAPVVPR STVGENRDDV ITPKSSQHDG  120
PAAKAAKRSR KNQYRGIRQR PWGKWAAEIR DPSKGVRVWL GTYNTAEEAA RAYDAEARKI  180
RGKKAKVNFP DEGLNGQKSI QKPSAANQTK VAPPSMTCAN EAFGHPSNGD NDLFAMFAFS  240
DTKVPVKPAE TAAFVPPLKP LVPTERFGAN MLSDQSSNSY GSSDFGWDDE TMMPDYTSVL  300
APNNSVPAYA ELVYLQDPPS KRMRNNYGVA VPVPKGNGAP NLTQDMSGFD PEMRVLQMPY  360
VDSSSDVSMD SLLQNDGTQD GDLWSLDELL MEAGPLPVAK MKSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-20132190160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-20133190563ATERF1
3gcc_A6e-20133190563ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956913.11e-171PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLA0A0A9P8100.0A0A0A9P810_ARUDO; Uncharacterized protein
STRINGSi030088m1e-171(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.21e-36related to AP2 12